The area of graph grammars and graph transformations generalizes formal language theory based on strings and the theory of term rewriting based ... foundations of all the basic approaches to ...

In the default model, the graph representing each individual enhancer can be arbitrarily complicated. To show how the ABC Score formula can arise from the default model, we need to impose the further ...

While most studies focus on the entire protein structure, they often overlook the local structure of protein pockets ... Subsequently, we construct a geometric graph neural network module capable of ...

BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for ...

To address these limitations, we introduce a graph structure learning layer designed to refine the original, noisy graph structure, enhancing the representation of node relationships. This enables our ...

You can think of language as having algebraic structure, for instance. When I multiply two numbers, I get another number. In the same way, I can “multiply,” or combine, two phrases in English and get ...

Cytoscape.js is a fully featured graph theory library. Do you need to model and/or visualise relational data, like biological data or social networks? If so, Cytoscape.js is just what you need.

He received his B.A. from Providence College, his M.S. from the University of Vermont, and a Ph.D. from Emory University. His research interests are in combinatorics (the art of counting) and graph ...

and category theory to demonstrate that Einstein-Rosen bridges and EPR states represent different manifestations of the same underlying computational structure. Our primary contributions are: 1) A ...