Computational Genomics Tutorial — Genomics Tutorial 2020.2.0 …
Computational Genomics Tutorial¶ This is an introductory tutorial for learning computational genomics mostly on the Linux command-line. You will learn how to analyse next-generation …
仅显示来自 genomics.sschmeier.com 的搜索结果1. Introduction
1. Introduction¶. This is an introductory tutorial for learning genomics mostly on …
2. Tool installation
Genomics Tutorial. Docs ... We need to add some channels to make the …
3. Quality control
3.7. PhiX genome¶. PhiX is a nontailed bacteriophage with a single-stranded …
4. Genome assembly
4.9. Web links¶. Lectures for this topic: Genome Assembly: An Introduction …
5. Read mapping
5.6.1. Overview¶. BWA is a short read …6. Taxonomic investigation
The output of kraken-report is tab-delimited, with one line per taxon. The fields of the …
This is an introductory tutorial for learning computational genomics mostly on the Linux command-line. You will learn how to analyse next-generation sequencing (NGS) data. The data you will …
- 文件大小: 4MB
- 页数: 90
6. Taxonomic investigation — Genomics Tutorial 2020.2.0 …
- Preface¶ We want to investigate if there are sequences of other species in …
- Overview¶ The part of the workflow we will work on in this section can be …
- Before we start¶ Lets see how our directory structure looks so far: $ cd …
- Kraken2¶ We will be using a tool called Kraken2 [WOOD2014]. This tool …
- Centrifuge¶ We can also use another tool by the same group called …
Genomics Boot Camp - GitHub Pages
2021年1月24日 · The Genomics Boot Camp is a resource that helps you to start your journey in practical analysis of genomic data, with a focus on SNP data. The chapters follow the same …
Computational Genomics with R - GitHub Pages
2020年9月30日 · A guide to computationa genomics using R. The book covers fundemental topics with practical examples for an interdisciplinery audience
will learn how to evaluate the quality of data as provided by a sequencing facility, how to align the data against a known and annotated reference genome and how to perform a de-novo …
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Computational Genomics Tutorial
2020年6月1日 · This is an introductory tutorial for learning computational genomics mostly on the Linux command-line. You will learn how to analyse next-generation sequencing (NGS) data. …
Computational Genomics Tutorial Release2019.03 Sebastian Schmeier (https://sschmeier.com) Jun 01, 2020
Genomics - Interdisciplinary Tutorial Resources
2020年4月21日 · A guided analysis tutorial using the Seurat clustering workflow– featuring new computational methods for single-cell datasets. Implements QC and data filtration, calculation …
Sphinx documentation source for a computational genomics tutorial.
A computational genomics tutorial with continuous integration, using Travis-CI, and deployment, using Netlify, and sphinx. The production version of the deployed site: …
